Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015933846.1_cds_XP_016480040.1_71522
CDS Infomation

[gene=LOC107801265] [db_xref=GeneID:107801265] [protein=E3 ubiquitin-protein ligase Hakai-like] [protein_id=XP_016480040.1] [location=join(86510..86761,88685..88743,89459..90641)] [gbkey=CDS]
Sequence

ATGCTTCAGATCCGGCTTAGCAAACCAGCCAGTGAGAGTGGTGGAGGTGCTAAGTCTTTA
CCTTCAGACAGTATTACAGTTGCTTGTCCTGATCACCTTGTTTTAGCTGATCTTCCTGTA
GCCAAGAGCCTTGGTTCAGCAAATACTGCTTCTCTGCTCAAGACTGTTGGCCGCAGGTCC
CGTCGCCAACTTGGTGAACGAGTACATTTTTGTGTCCGTTGTGACTTTCCAATTGCTATT
TACGGACGTCTGAGTCCATGTGAACATGCCTTCTGTTTAGATTGTGCCAGGAGTGATTCT
CTCTGCTACCTCTGTGATGAACGCATTCAGAAGATTCAGACAATTAAATTGATGGAAGGG
ATCTTCATCTGTGCAGCTCCGCATTGTCTCAAGTCCTTTCTGAAGAAGATTGAATTCGAA
TCTCATATTCATGAGAACCACGGTGATCTCCTTCATCAAACTGCAGAAAAAGATGGAAAC
GTTTCGGAGTCTGCCAGTGCTAGAAAACCTGCTGCCTCTGATTCTACAGTGCAAGCACCA
CCTAGGCCCCTATTTTCTCCTAGTTCAGGTTCTCAGGTACATGATCGTGAAGACAAAGCT
CATCATTCTCAAACTAGAGACCAACAGCCTCCTAGGCTTGTCATGCAACCAAAGCCAACA
CCACCTTTCGCTGGGTCAATCCCAAATCATCCATTAGAGCAACAGTCTGATGGTAATCCT
CCTCCGGGCTTTGAAAGACCCGGCAGCCAGAACCGGTTTCCTCAACCAGGTTTTGACACA
CAGGGCGCATTGCGGCCAGAGCCAGGTCAGTTTCCGGACAAGCAACAAGGGATTATAGGG
GGTTCCCCTTTCCCTGAATATCCTATGCACATGTCCCAACCTCATGGCTTTGCAGTGCCT
ATGAGTTCGAATCCAGGTTTGGCTCCTCAATTTGGTTATCCTCAGTTTGCACCCGATGGA
GCCCAACCATTTTATGGTGCCCCGTTTGAGATGCCTAGGCCAGACTCAACTCCTGAAATG
GGATCAGAACAAGGGTCTTTGCTAGGTTTTCCACCCGGCGCTGCAGGAAATATGAATTTT
GCAGAAAATTACCCTCGACCATGGAATATGGGGCAGCCGGTTGGGCCTTTTGAGCCCACT
GCAGTTCAACCTCCTGGGGATGGTTTTGTAAATGCCGCTGATCCTCAAGGAAGACCAGTA
TTTTTCCAAGGAGACTATGGAAGGAATGCCGGTGTAATGCCCTCAAACCTGCCACCTCCA
CCTTCAGTCAACCGAGGATTGGAAGGCGGACAGAGTGGAAATTCAATGGACAGCAGAGAT
AGCAAGGGTATATTGATGCCACAACATATGGCCCTTCCGCCACCCCCTCCTTTACCTCAT
CCCATGTCACAACTTCAAAGAGGAGGCAGGCACTACTCTGATGCTAGTCATGATGGACAG
GGCTTTGGTTGGCAACACGAGAAGCGTGATAGTTATGGAAGCAGCCAGGACTAG

Peptide Sequence

PEP ID

XP_016480040.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase Hakai-like [Nicotiana tabacum]
Sequence

MLQIRLSKPASESGGGAKSLPSDSITVACPDHLVLADLPVAKSLGSANTASLLKTVGRRS
RRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKLMEG
IFICAAPHCLKSFLKKIEFESHIHENHGDLLHQTAEKDGNVSESASARKPAASDSTVQAP
PRPLFSPSSGSQVHDREDKAHHSQTRDQQPPRLVMQPKPTPPFAGSIPNHPLEQQSDGNP
PPGFERPGSQNRFPQPGFDTQGALRPEPGQFPDKQQGIIGGSPFPEYPMHMSQPHGFAVP
MSSNPGLAPQFGYPQFAPDGAQPFYGAPFEMPRPDSTPEMGSEQGSLLGFPPGAAGNMNF
AENYPRPWNMGQPVGPFEPTAVQPPGDGFVNAADPQGRPVFFQGDYGRNAGVMPSNLPPP
PSVNRGLEGGQSGNSMDSRDSKGILMPQHMALPPPPPLPHPMSQLQRGGRHYSDASHDGQ
GFGWQHEKRDSYGSSQD

Transcript Sequence

Gene sequence data has not been registered.